Rafay Ahmed

Rafay
Ahmed
Postdoctoral Fellow
Orthopaedic Surgery

Earlier Rafay obtained his Master’s degree in Nanotechnology from KTH-Royal Institute of Technology, Sweden and did his thesis in Holst Center at Philips High Tech Campus, Nederland. There he fabricated and characterized the flexible nanostructured optochemical sensors for the detection of hazardous gases. Before pursuing his PhD, He worked as a lecturer for 3 years in Department of Physics, COMSATS university Islamabad, Pakistan and taught electronics courses to undergraduate students. He did Bachelors in Electronics from COMSATS university, Islamabad and also worked as a Research Associate in the same department.

Lab Phone
(615) 322-7184
Lab Address
MCN
1161 21st Ave S
Room / Suite
B0213
Nashville
Tennessee
37232
rafay.ahmed@vumc.org

Rafay Ahmed received his PhD from City University of Hong Kong in 2019. There he diagnosed the healing of calvarial defects by assessing the molecular and elemental changes using Raman spectroscopy, X-Ray fluorescence spectroscopy, optical profiling and microscopies. Additionally, he developed the Laser Induced Breakdown Spectroscopy system in his lab that was used for several elemental studies including bones, teeth, thyroid, Red blood cells etc. Currently, Rafay is working as postdoctoral research fellow in Dr. Nyman’s lab on the development of Spatially Offset Raman Spectroscopy to translate it for clinical assessment of bone matrix quality; to diagnose the reasons of fragility fractures in type 2 diabetes; fatigue testing of cortical bones using single edge notch bend specimen and assessing the ability of Raman spectroscopy to predict mechanical properties of human bone.

Sun H. Peck, Ph.D.

Sun
H.
Peck
Ph.D.
Assistant Professor
Medicine, Division of Clinical Pharmacology
Assistant Professor
Biochemistry, Vanderbilt University School of Medicine
Assistant Professor
Biomedical Engineering, Vanderbilt University School of Engineering
Research Health Scientist
Nashville Veterans Affairs Medical Center

Background

Dr. Peck received her doctorate in Chemical Biology from Harvard University under the mentorship of Dr. David Liu in the Department of Chemistry and Chemical Biology, where she developed novel molecular evolution techniques to study protein-protein interactions and protein function. Dr. Peck’s interests in macromolecular chemistry and related biological functions led her to pursue postdoctoral training in lysosomal storage disorders and pathological consequences of dysregulated metabolism, first in the Division of Biology at Kansas State University under the mentorship of Dr. Stella Lee, elucidating the role of N-glycosylation in protein trafficking, folding, and function in neuronal ceroid lipofuscinoses, a family of neurodegenerative lysosomal storage disorders. She continued her postdoctoral training in the Department of Orthopaedic Surgery at the University of Pennsylvania as an NIH F32 postdoctoral fellow under the mentorship of Drs. Lachlan Smith and Eileen Shore. Under this award, Dr. Peck investigated the molecular mechanisms underlying dysregulated vertebral bone development in mucopolysaccharidoses, a family of lysosomal storage disorders that presents with severe musculoskeletal deformities as a consequence of aberrant glycosaminoglycan metabolism. During her postdoctoral fellowship, Dr. Peck also elucidated developmental signals underlying the formation of the glycosaminoglycan-rich region of the intervertebral disc known as the nucleus pulposus and led studies into cell-based regenerative therapies for treating disc degeneration.

Dr. Peck’s overall research interests are to combine her chemistry background with her postdoctoral experience in musculoskeletal biology to investigate carbohydrate-mediated signaling in spine development and homeostasis, how dysfunction in these signals lead to degeneration and diseased states, and to develop biologic and engineering approaches to regenerative therapies for musculoskeletal tissues.

Complete bibliography

Lab Address
Medical Research Building IV / Light Hall
2215B Garland Ave
Room / Suite
1175
Nashville
Tennessee
37232

The overarching focus of my research laboratory is understanding the role of the extracellular matrix (ECM) in musculoskeletal biology, particularly of carbohydrate-mediated signaling and differentiation as regulated by glycosaminoglycans (GAGs). Glycosaminoglycans are unbranched polysaccharides that are abundantly present in many organ systems in the body. In musculoskeletal tissues, GAGs are typically thought to serve primarily structural roles, as they are highly polar, hydrophilic moieties capable of high osmotic swelling pressure. However, there is mounting evidence that GAGs in the ECM interact with secreted signaling molecules, cells, and other ECM components, and these interactions play a substantial role in controlling the activity of resident cells and subsequent tissue development, function, and homeostasis. While the primary molecules of interest are GAGs, our research encompasses the investigation of related ECM components such as collagens and growth factors that interact with GAGs to carry out important biological functions. We combine analytical chemistry, biochemistry, and molecular biology methods to identify the chemical composition of the ECM and how particular components regulate development and homeostasis, as well as how dysregulated ECM deposition or degradation contribute to disease or degeneration. Ultimately, we seek to understand these mechanisms in order to develop regenerative therapies for bone, intervertebral disc, and cartilage. To this end, we have multiple ongoing projects in the lab that are designed to elucidate normal and pathologic contributions of the ECM in musculoskeletal tissues.

  1. Dysregulated extracellular matrix deposition in heterotopic ossification.
  • Heterotopic ossification (HO) is the pathologic formation of bone in extra-skeletal tissues. HO can develop following significant trauma such as blast, brain, or spinal cord injuries, burns, or after routine surgical procedures such as joint replacement or amputation surgery. Ectopic bone formation leads to impaired wound healing, chronic infection, and chronic pain, which can hinder mobility and function as well as the use of prosthetics. This can lead to further related health complications such as opioid addiction, depression, and suicide. HO affects the Veteran population disproportionately but has been found in all patient populations. The molecular mechanisms that drive this aberrant bone formation are not well-understood, and thus, effective therapeutics are lacking. We are focused on elucidating the mechanisms underlying aberrant bone formation as driven by tissue and molecular level changes to the ECM.
  1. Extracellular matrix-mediated signaling and patterning in early spine development.
  • The embryonic notochord is a unique, transient structure that serves as the main signaling center for directing developmental patterning. The notochord starts out as a GAG-rich rod-like structure, which over time becomes sequestered in the ECM-rich central region of the intervertebral disc referred to as the nucleus pulposus (NP). My previous work identified large changes in global expression profiles of ECM molecules during this notochord to NP transition. However, the molecular details of how this GAG-rich structure directs spine patterning and transforms into the NP in early embryonic development remains unknown. We are interested in identifying ECM-mediated signaling that drive spine formation.
  1. Extracellular matrix regeneration as a therapeutic strategy for back pain.
  • The nucleus pulposus (NP) is the ECM-rich central region of the intervertebral disc that is responsible for distributing compressive loads on the spine. Pathological changes to this region are often thought to initiate progressive structural deterioration of the entire intervertebral joint. Degeneration of the disc is strongly implicated as a cause of low back pain, which ~85% of people will experience in their lifetime. This is a significant clinical problem that results in over $100 billion in healthcare and socioeconomic costs every year. Current treatments are mostly palliative, and the fraction of patients who are candidates for surgical interventions have high failure rates. Importantly, none of the available treatments maintain or restore native disc structure or biomechanical function, and thus, there is a significant clinical need to develop therapeutic approaches that manage symptoms as well as regenerate native disc tissue. We are working to elucidate the pathologic breakdown of the ECM that leads to intervertebral disc degeneration on the molecular level. Furthermore, in conjunction with our interests in identifying the ECM-mediated signaling that drives early NP formation, we are working on applying these developmental signals to induce ECM formation as a potential treatment option for disc degeneration.
  1. Pathological changes to extracellular matrix composition as a result of sepsis.
  • Systemic inflammatory response syndrome, or sepsis, is a serious medical condition with a high mortality rate. Even following recovery, sepsis patients often suffer from a myriad of long-lasting medical complications, which include neurological dysfunction, cardiovascular disease, and musculoskeletal disability. Interestingly, the organ systems that are affected in post-sepsis syndrome are often not the site of the primary infection that leads to sepsis. In collaboration with Dr. Fiona Harrison (Division of Diabetes and Endocrinology and The Vanderbilt Brain Institute), we are seeking to understand the molecular connections between systemic inflammation and resulting secondary pathology by elucidating the changes that occur in ECM metabolism as a result of sepsis.

Other areas of interest in development:

  1. The role of extracellular matrix synthesis in bone formation and fracture healing.
  2. The effects of metabolic disorders (obesity, diabetes, etc.) on extracellular matrix synthesis in wound healing.
sun.peck@vumc.org

Postdoctoral Fellow, Department of Orthopaedic Surgery, University of Pennsylvania

Postdoctoral Fellow, Division of Biology, Kansas State University

Ph.D., Chemical Biology, Harvard University

M.S., Chemistry, University of Pennsylvania

B.A., Biochemistry and Music, University of Pennsylvania

Elizabeth (Beth) Rendina-Ruedy, Ph.D.

Elizabeth (Beth)
Rendina-Ruedy
Ph.D.
Assistant Professor
Medicine, Division of Clinical Pharmacology
Assistant Professor
Molecular Physiology and Biophysics
Member
Molecular Pathology and Immunology

Background

Dr. Rendina-Ruedy’s unique training and research experience is deeply rooted in the basic science of bone biology with an emphasis in nutritional biochemistry. She received her Ph.D. from the College of Human Sciences with an emphasis in Nutritional Sciences in May 2014 from Oklahoma State University under the mentorship of Dr. Brenda Smith. While her M.S. focused on bioactive foods and bone health, her Ph.D. research was aimed at investigating the role of autophagy in bone metabolism as it related to type 2 diabetes mellitus skeletal fragility. She then transitioned to a postdoctoral fellowship in the Department of Orthopaedic Surgery and Rehabilitation at VUMC, in the Vanderbilt Center for Bone Biology (VCBB) in Dr. Daniel Perrien’s lab.  During this time her project focused on how the histone deacetylase, sirtuin1 (Sirt1), was involved in mechanotransduction of bone. She then continued her postdoctoral training under Dr. Clifford Rosen’s mentorship at the Maine Medical Center Research Institute (MMCRI).  While at MMCRI Dr. Rendina-Ruedy’s research interest returned to cellular bioenergetics and metabolic pathways within the skeletal niche.

Dr. Rendina-Ruedy’s current work focusses on developing a comprehensive understanding of how metabolic pathways impact bone health.  Within this scope, the Rendina-Ruedy lab’s vision is to identify novel biological mechanisms to develop new treatments that can improve the quality of life for patients with compromised bone health.

Complete Bibliography

Phone
(615) 875-5247
Office Address
Medical Research Building IV/ Light Hall
2215B Garland Ave
Room / Suite
1155C
Nashville
Tennessee
37232-0575

The Rendina-Ruedy Lab is focused on developing a comprehensive understanding of how metabolic pathways impact bone health. Bone is an incredibly dynamic tissue that undergoes continuous remodeling involving bone resorbing osteoclasts, bone forming osteoblasts, and mechano-sensing osteocytes. Due to the high energetic demands of this process targeting metabolic pathways in bone cells is an incredibly provocative tool that can be applied to combat various conditions which lead to increased fracture incidence (i.e., post-menopausal osteoporosis, type 2 diabetes mellitus, and age-related osteoporosis). As such, the Rendina-Ruedy lab has ongoing projects aimed at understanding how bone cells, and cells within the bone marrow niche, store, mobilize, and utilize various metabolic substrates.  In addition to understanding how these metabolic pathways impact bone health in a cell-autonomous manner, our lab is particularly interested in how alterations in bone cell bioenergetics modulates whole-body metabolism.

elizabeth.rendina-ruedy@vumc.org

Staff Scientist, Maine Medical Center Research Institute, 2017-2019

Postdoctoral Fellow, Maine Medical Center Research Institute, 2015-2017

Postdoctoral Fellow, Orthopaedic Surgery and Rehabilitation, 2014-2015, Vanderbilt University Medical Center

Ph.D. Nutritional Sciences, 2014, Oklahoma State University

M.S. Nutritional Sciences, 2009, Oklahoma State University

B.S. Biochemistry, 2007, Oklahoma State University

Simmons Publications

  1. Simmons J, Zeitler P, Fenton L, Abzug M, Fiallo-Scharer R, Klingensmith G. Rhinocerebral mucormycosis complicated by internal carotid artery thrombosis in a pediatric patient with type I diabetes mellitus:  a case report and review of the literature. Pediatric Diabetes. 6:4, December 2005, 234-238. PMID: 16390393
  2. Simmons J, McFann K, Brown A, Rewers A, Follansbee D, Temple-Trujillo R, Klingensmith G.  Reliability of the Diabetes Fear of Injecting and Self-Testing Questionnaire (D-FISQ) in Pediatric Patients with Type 1 Diabetes.  Diabetes Care.

Dahir Publications

  1. Ectopic ACTH Hypersecretion Due to a Primary Pulmonary Paraganglioma, Kathryn McCrystal Dahir, Adriana L. Gonzalez, Monica P. Revelo, Rafeeq Ahmed,  John R. Roberts, and Lewis S. Blevins, Jr.  Endocrine Practice. 2004 Sep-Oct; 10(5):424-8
  2. Treatment of Adult Patients with Congenital Adrenal Hyperplasia Due to 21-Hydroxylase Deficiency: A Clinical Practice Audit, Howard Y. Li, M.D., Kathryn McCrystal Dahir, M.D. and Lewis S. Blevins, Jr., M.D.  Endocrine Practice.

Archer's Publications

  1. Ficke JR, Obremsky WT, Gaines RJ, Pasquina PF, Bosse MJ, Mamczak CN, O’Toole RV, Archer KR, Born CT, Fleming ME, Watson JT, Gordon WT, Stannard JP, Rispoli DM, MacKenzie EJ, Wenke JC, Hsu JR, Pollak AN, and Anderson R.  Extremity War Injuries VII – A Decade of War: Reprioritization of Research for Combat Casualty Care. J Am Acad Orthop Surg. (In press)
  2. Archer KR, Castillo RC, Wegener ST, Abraham CM, and Obremskey W. Pain and Satisfaction in Hospitalized Trauma Patients: The importance of Self-efficacy and Psychological Distress.