Allison Lake

Allison
Lake
MSTP Student
Human Genetics Training Program
Vanderbilt Genetics Institute
allison.m.lake@vanderbilt.edu

Allie is a student in the Medical Scientist Training Program at Vanderbilt. After graduating from Haverford College with degrees in math and computer science, she worked in software development and later in computational genetics research before arriving at Vanderbilt. She looks forward to continuing to integrate her research interests in psychiatric genomics in the Davis lab with her clinical interest in psychiatry.

Cathy Shyr, PhD

Cathy
Shyr
PhD
Assistant Professor
Department of Biomedical Informatics
Assistant Professor of Pediatrics
Assistant Professor of Biostatistics
Office Address
2525 West End Avenue
Nashville
Tennessee
37203
cathy.shyr@vumc.org

Cathy Shyr, PhD is an assistant professor of biomedical informatics, pediatrics, and biostatistics at Vanderbilt University Medical Center. She is a statistical informatician specializing in machine learning, AI and methods for estimating personalized treatment effects. Her research focuses on the development and implementation of novel statistical machine learning (ML) and AI methods to advance precision medicine and accelerate diagnosis.

Dr. Shyr has developed methods aimed at improving the generalizability of statistical ML and causal inference models across multiple datasets for estimating personalized risks and treatment effects. She is an active member in the All of Us Research Program’s Data and Research Center and the Recruitment Innovation Center, where she leads the development of AI tools supporting the return of study results. In addition, she has developed and implemented large language models that leverage unstructured electronic health records data for diagnosing rare diseases at the Vanderbilt Undiagnosed Diseases Network. She is the recipient of the National Library of Medicine’s K99/R00 award for her proposal, “Development and Implementation of Statistical Machine Learning Methods to Shorten Rare Disease Odysseys.”

Dr. Shyr earned her PhD in Biostatistics at Harvard University and completed her postdoctoral training in Biomedical Informatics at Vanderbilt University Medical Center.

Rory Tinker, MD

Rory
Tinker
MD
PGY-3, Combined Pediatrics Medical Genetics Residency Program
Department of Pediatrics
Office Address
Medical Center North
Vanderbilt University Medical Center
Room / Suite
DD-2205
Nashville
Tennessee
37232-2579
rory.tinker@vumc.org

Undergraduate: University of Manchester (Manchester, UK)
Medical School: University of Manchester (Manchester, UK)

Rory is originally from London in the United Kingdom where he went to medical school and conducted an integrated BSc in Neuroscience. Working as a career for children with genetic disorders inspired Rory to pursue a career in Pediatric Genetics. His principal academic interest is how genetic technology can identify, diagnose, and ultimately, treat rare disorders. Outside of work, Rory enjoys watching England’s national soccer team fail to win major tournaments, cooking Italian food, and traveling (with Brazil being Rory’s favorite destination so far).

Sergio Mundo, PhD

Sergio
Mundo
PhD
Research Fellow
Biomedical Informatics
2525 West End
Nashville
Tennessee
37203
sergio.mundo@vumc.org

Brian R. Lindman, MD

Brian
R.
Lindman
MD
Medical Director
Structural Heart and Valve Center
Associate Professor of Medicine
Division of Cardiovascular Medicine

My research is focused on calcific aortic stenosis, including clinical and translational studies related to biomarker discovery, risk prediction, and elucidating pathophysiology to identify adjunctive interventions to improve patient-centered outcomes.

I am actively involved in our heart valve team, evaluating patients clinically and performing the transesophageal echocardiograms for transcatheter valve procedures. My research is centered on calcific aortic stenosis, including several clinical and translational projects. Our group uses various imaging techniques and a biobank of specimens to perform biomarker discovery and elucidate the pathobiology of aortic stenosis and the effects of pressure overload on the left ventricle and pulmonary vasculature. We have a particular interest in how diabetes affects these processes and aim to identify novel targets for adjunctive medical therapy to improve clinical outcomes in patients with aortic stenosis. Novel rehabilitation strategies targeting frailty are also an area of interest. As a heart valve center, we seek to integrate a clinical and research mission in an innovative way that informs disease paradigms and influences management guidelines in valvular heart disease.

brian.r.lindman@vumc.org

Bassim El-Sabawi, MD

Bassim
El-Sabawi
MD
Clinical Fellow
Division of Cardiovascular Medicine
Vanderbilt Genomic Medicine Training Program
Department of Biomedical Informatics

Dr. El-Sabawi is a VGM postdoctoral fellow and a cardiovascular medicine fellow. He is originally from San Diego, CA. He completed his MD Training at the Keck School of Medicine of USC and Medical Residency at Mayo Clinic (Rochester).

Bassim's prior work has focused on optimizing outcomes of transcatheter interventions for valvular and structural heart diseases. He is now focused on identifying whether proteomic signatures of myocardial remodeling/dysfunction are present early in aortic stenosis before traditional clinical thresholds for intervention. If present, this may point to known/novel pathways contributing to heart failure in aortic stenosis patients and provide an early molecular barometer for clinical surveillance and personalized timing for aortic valve replacement.

bassim.el-sabawi@vumc.org

Samuel Jean-Baptiste, MD

Samuel
Jean-Baptiste
MD
Posdoctoral Research Fellow
Biomedical Informatics
2525 West End Avenue
Nashville
Tennessee
37203
samuel.jean-baptiste@vumc.org

Dr. Samuel Jean-Baptiste received his medical degree in April 2019 from Florida International University. He is a Radiation Oncology Physician at Vanderbilt University Medical Center and is pursuing his Master's degree.

Yelena Cox, MBA

Yelena
Cox
MBA
Application Developer
Biomedical Informatics
Office Address
2525 West End Avenue
Suite 1500
Nashville
Tennessee
37203
yelena.cox@vumc.org

https://www.linkedin.com/in/yelena-cox/

Yelena Cox, MBA, previously worked for over six years in medical research, both on the clinical and regulatory side, before making the switch to application development. She currently works as an Application Developer under Dr. Robert Carroll in the Department of Biomedical Informatics at VUMC. She holds the Certified Professional in IACUC Administration (CPIA) credential. 

Freida Blostein, PhD

Freida
Blostein
PhD
Postdoctoral Research Fellow
Vanderbilt Genomic Medicine Training Program
2525 West End Avenue
7th Floor
Nashville
Tennessee
37203
freida.blostein@vumc.org

Freida Blostein, MD, PhD joined the Davis and Cox Labs as a postdoctoral fellow supported on the Vanderbilt Genomic Medicine Training Program. She received a PhD and MPH in Epidemiology from the University of Michigan, and a BS in Evolutionary Anthropology from the University of Michigan. Freida’s doctoral research focused on creating biomarkers for the causal chain – susceptibility, exposure, and disease – using omics data in longitudinal, epidemiological cohorts. She is especially interested in gene-environment interactions in multifactorial diseases.

Website: freidablostein.com

Lea K. Davis, PhD

Lea
K.
Davis
PhD
Associate Professor of Medicine
Department of Medicine, Division of Genetic Medicine
Associate Professor
Department of Biomedical Informatics
Associate Professor
Department of Psychiatry and Behavioral Sciences

Lea K. Davis, PhD, is an Associate Professor in the Division of Genetic Medicine in the Department of Medicine at Vanderbilt University Medical Center. She is Associate Professor in Biomedical Informatics, Physiology & Biophysics, and in Psychiatry and Behavioral Sciences. Her work explores the genomic architecture of complex traits, defined as the type, frequency, and function of DNA variants en masse that contribute to the genetic predisposition of a given trait.

Until recently, the human genetics field has been highly focused on the identification of individual DNA variants associated with complex phenotypes. However, recent research from the Davis Lab and others has demonstrated that many complex traits, including Tourette Syndrome and obsessive-compulsive disorder, are highly polygenic with risk distributed across hundreds or thousands of polymorphisms. Through the application of quantitative genetic methods, the Davis Lab seeks to answer questions that follow from this observation including: How does genomic architecture differ across complex human traits? What kinds of selective pressures shape the polygenic landscape of different phenotypes? How do functional elements (e.g., eQTLs, enhancers, methylation QTLs) influence or concentrate risk? How does sexual dimorphism influence the expression of polygenic burden?

The overarching goal of the Davis Lab is to integrate functional knowledge of the genome into polygenic approaches to answer such questions. To do this, the Davis Lab uses state-of-the-art computational and statistical methods to inform classical quantitative models (used for decades in animal and plant genetics) along with biologically relevant expression data, rare variant data (e.g., exome data, copy number variant data), and environmental data (e.g., prenatal infection or smoking history). Through these integrated approaches, Dr. Davis hopes to understand the biological basis and genetic architecture of common complex phenotypes.

 

» View Publications In PubMed

lea.k.davis@vumc.org