TrioDenovo: A Bayesian framework for de novo mutation calling in parents-offspring trios.
More info is available: http://genome.sph.umich.edu/wiki/Triodenovo
PolyMutt: A likelihood framework for calling genotypes and de novo mutations in general pedigrees.
More info is available: http://genome.sph.umich.edu/wiki/Polymutt
PolyMutt2: A tools to leverage identity-by-descent (IBD) allele sharing for genotype calling in general pedigrees.
More info is available: http://genome.sph.umich.edu/wiki/Polymutt2
TrioCaller: A linkage-disequilibrium framework to genotype inference in parents-offspring trios.
More info is available: http://genome.sph.umich.edu/wiki/TrioCaller
gTDT: A group-wise TDT for haplotype-based association testing of rare variants with complex disease.
More info is available: http://genome.sph.umich.edu/wiki/GTDT
iDriver: A software suite to perform integrative modelling of multi-oimcs data to identify cancer driver genes.
More info is availalbe: http://genome.sph.umich.edu/wiki/Idriver
dVAR: A framework for de novo pattern discovery in high-dimensional genomics data for accurate assessment of the functionality of noncoding variants. More info is availalbe: https://www.vumc.org/cgg/dvar